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@FOI-Bioinformatics

FOI-Bioinformatics

Popular repositories

  1. flextaxd flextaxd Public

    FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

    Python 63 7

  2. nanometa_live nanometa_live Public

    A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline …

    Python 13 2

  3. CanSNPer2 CanSNPer2 Public

    CanSNPer2: A toolkit for SNP-typing bacterial genomes.

    Python 6 2

  4. STARPS STARPS Public

    A simulation tool for cultivation of bacterial populations

    C 1

  5. cansnper1.1 cansnper1.1 Public

    CanSNPer1.1: A toolkit for SNP-typing using NGS data. Copyright (C) 2016 Adrian Lärkeryd Updates done by David Sundell VERSION 1.1.0 (Adjusted to python 3, python 2 support is depricated) This prog…

    Python 1

  6. repgenr repgenr Public

    RepGenR (Representative-Genome Repositories) clusters genome sequences based on average nucleotide identity to produce flexible databases

    Python 1 1

Repositories

Showing 10 of 13 repositories
  • repgenr Public

    RepGenR (Representative-Genome Repositories) clusters genome sequences based on average nucleotide identity to produce flexible databases

    Python 1 1 0 0 Updated Apr 15, 2024
  • nanometa_live Public

    A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.

    Python 13 GPL-3.0 2 0 0 Updated Mar 6, 2024
  • CanSNPer2 Public

    CanSNPer2: A toolkit for SNP-typing bacterial genomes.

    Python 6 GPL-3.0 2 20 0 Updated Jan 17, 2024
  • flextaxd Public

    FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

    Python 63 GPL-3.0 7 5 1 Updated Nov 21, 2023
  • metaquest Public

    MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.

    Python 1 GPL-3.0 0 0 1 Updated Oct 11, 2023
  • CanSNPer2-data Public

    Repository for the CanSNP database contaning the source tree from CanSNPer version 2 and later

    0 0 0 0 Updated Mar 14, 2023
  • useful-scripts Public

    A collection of useful scripts

    Perl 0 0 0 0 Updated Dec 8, 2021
  • NanoCLUST Public Forked from genomicsITER/NanoCLUST

    NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

    Nextflow 0 MIT 44 0 0 Updated Feb 23, 2021
  • cansnper1.1 Public

    CanSNPer1.1: A toolkit for SNP-typing using NGS data. Copyright (C) 2016 Adrian Lärkeryd Updates done by David Sundell VERSION 1.1.0 (Adjusted to python 3, python 2 support is depricated) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Fou…

    Python 1 GPL-3.0 0 0 0 Updated Dec 9, 2019
  • STARPS Public

    A simulation tool for cultivation of bacterial populations

    C 1 0 0 0 Updated Nov 21, 2019
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