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serotyping

Here are 4 public repositories matching this topic...

phac-nml / sistr_cmd

SISTR (Salmonella In Silico Typing Resource) command-line tool

bioinformatics serotyping salmonella cgmlst sistr

Updated Mar 14, 2024
Python

UPHL-BioNGS / Grandeur

UPHL's Reference Free Pipeline

docker bioinformatics genomics nextflow ngs singularity illumina serotyping prokaryotes

Updated May 14, 2024
Nextflow

MDU-PHL / LisSero

In silico serotype prediction for Listeria monocytogenes

bioinformatics public-health microbial-genomics serotyping listeria-monocytogenes

Updated Feb 26, 2023
Python

xiaoli-dong / pathogenseq

Pathogen whole genome sequence (WGS) data analysis pipeline

nanopore pathogen taxonomy assembly ngs amr mlst illumina plasmid serotyping virulome emm-typing capsular-typing

Updated May 2, 2024
Nextflow

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