Pipeline for Ribosome Profiling Data
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Updated
Jul 5, 2023 - Groovy
Pipeline for Ribosome Profiling Data
A tool for accurately detecting actively translating ORFs from Ribo-seq data
Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).
An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment fi…
Ribosome profiling mapping quality control tool
A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)
Sublime Text plugin for the Ribosome code generator
Programas usados em BioInformática
Fast data processing for ribosome footpring profiling experiments from bam files
Comparison of the ability of open reading frames to recruit ribosomes within individual transcripts
Human and mouse genome assemblies customized for rDNA mapping
Datatypes for the ribosome.
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