ribosome-profiling
Here are 31 public repositories matching this topic...
Analyze ribosome profiling for organisms have ncbi annotation
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Oct 10, 2017 - Jupyter Notebook
Repo for the files needed for embedding mappingQC in the Galaxy environment
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Mar 8, 2018 - HTML
Snakemake pipeline for Ribo-Seq analysis
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May 31, 2018 - Python
Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.
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Jul 19, 2018 - R
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
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Aug 4, 2018 - Python
Fast data processing for ribosome footpring profiling experiments from bam files
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Feb 5, 2019 - R
Workflow for Ribosome profiling data start and stop codon analysis.
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Mar 17, 2019 - Python
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
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Jul 30, 2019 - Python
Mathematica notebook to compare methods of ML for ribosom density on mRNA prediction
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Nov 8, 2019 - Mathematica
Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data
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Jan 8, 2021 - Jupyter Notebook
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
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Mar 5, 2021 - Python
Riborex: Fast and flexible identification of differential translation from Ribo-seq data
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Apr 9, 2021 - R
Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
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Apr 9, 2021 - R
workshop2020: Basic and advanced bioinformatics for RegenerationNEXT
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Apr 18, 2021 - R
Ribosome profiling mapping quality control tool
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Apr 20, 2021 - Python
Comparison of the ability of open reading frames to recruit ribosomes within individual transcripts
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May 21, 2021 - Python
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
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Aug 10, 2022 - Python
Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A
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Dec 28, 2022 - Python
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