Here are
19 public repositories
matching this topic...
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Updated
Feb 12, 2024
Python
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
Updated
Jan 15, 2024
Shell
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Rapid determination of appropriate reference genomes.
Updated
Jan 12, 2024
Python
Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database
Updated
Aug 31, 2017
Python
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Updated
Jun 14, 2022
Python
Fast and space-efficient taxonomic classification of long reads
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Updated
May 4, 2022
Python
Updated
Mar 19, 2023
Python
⬇️ Facilitates downloading NCBI's RefSeq with a human-readable file structure
Updated
Nov 9, 2017
Python
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
Updated
Nov 17, 2019
Jupyter Notebook
Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.
Updated
Sep 21, 2022
Shell
Downloading Genomes from RefSeq
Updated
Mar 9, 2023
Shell
Randomly download genomes from NCBI RefSeq and Genbank
Updated
Oct 30, 2020
Python
F# library for accessing and manipulating bioinformatic datasets.
Mapping RefSeq RNA to OrthoDB (Under Development)
Updated
Feb 16, 2019
Python
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
Updated
Oct 4, 2023
Python
Pipeline for the selection of canonical proteins for reference proteomes
Updated
May 4, 2024
Python
Improve this page
Add a description, image, and links to the
refseq
topic page so that developers can more easily learn about it.
Curate this topic
Add this topic to your repo
To associate your repository with the
refseq
topic, visit your repo's landing page and select "manage topics."
Learn more
You can’t perform that action at this time.