Toolbox for including enzyme constraints on a genome-scale model.
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Updated
Jun 7, 2024 - MATLAB
Toolbox for including enzyme constraints on a genome-scale model.
R package that creates fast dashboards for omics results.
mzSpecLib: A standard format to exchange/distribute spectral libraries
A collection of R functions to aid in host-pathogen genomic research
Currently working on multi-omics data analysis, featuring tools for data integration, processing, and visualization, with a focus on R and Python.
A repository for the Playbook Workflow Builder project.
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C..(Publication pending) This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
Exon is an OLAP query engine specifically for biology and life science applications.
A collection of Galaxy-related training material
Picotti lab data analysis package.
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
National Microbiome Data Collaborative (NMDC) unified data model
The codebase of the OpenMS project
Low level infrastructure to handle MS spectra
R package for the analysis of Multiplex Substrate Profiling by Mass Spectrometry for Proteases (MSP-MS) Data
Proteomics Mass Spectrometry Datasets for Machine Learning
Recalibrate Mass Spectrometry data in mzML format
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
A Framework for IMS-MS Raw Data Processing written in Rust and Python.
Absolute quantification package based on quantms.io
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