Lightweight bioinformatics pipeline for microbial genome recovery
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Updated
Jun 7, 2024 - Python
Lightweight bioinformatics pipeline for microbial genome recovery
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Mitochondrial Long-read Iterative Assembly
simplified cellranger for long-read data
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
A phase-aware pharmacogenomic diplotyper for PacBio datasets
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Inversion status and de novo assembly of Drosophila melanogaster
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
A fully integrated K-mer Informed Toolkit for Bioinformatics
Quality control plotting for long reads
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Fast and accurate de novo assembler for long reads
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Structural variation caller using third generation sequencing
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