Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
-
Updated
May 22, 2024 - Racket
Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
Schema and generated objects for biolink data model and upper ontology
MyGene.info: A BioThings API for gene annotations
KGX is a Python library for exchanging Knowledge Graphs
MyVariant.info: A BioThings API for human variant annotations
A database of paths that represent the mechanism of action from a drug to a disease in an indication.
BioThings API framework - Making high-performance API for biological annotation data
debugging biological networks to reach coherence, completeness and consistency
Integrated OBO ontology store
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
A collection of useful python functions for looking up information and working with the Biolink Model
Intelligent APIs for a more connected web: https://smart-api.info
Extracting gene sets from published pathway figures
MyChem.info: A BioThings API for chemical/drug annotations
BioThings Explorer: a schema-based client for API interoperability
This repo hosts the API metadata for the Translator project
Service that produces Translator compliant nodes given a curie
Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
Add a description, image, and links to the ncats-translator topic page so that developers can more easily learn about it.
To associate your repository with the ncats-translator topic, visit your repo's landing page and select "manage topics."