A PyTorch Basecaller for Oxford Nanopore Reads
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Updated
Jun 4, 2024 - Python
A PyTorch Basecaller for Oxford Nanopore Reads
Assembly and binning of metagenomes
Assembly and intrahost/low-frequency variant calling for viral samples
Structural variation caller using third generation sequencing
PEPPER-Margin-DeepVariant
A curated list of awesome nanopore analysis tools.
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Simple bacterial assembly and annotation pipeline
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
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