antibiotic resistance profiling of nanopore reads
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Updated
Jan 12, 2023 - HTML
antibiotic resistance profiling of nanopore reads
Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Nextflow pipeline to assemble genomes from nanopore reads.
Benchmarking several NVIDIA GPUs with dorado
Course for ROPES summer school, May 2023
Target site duplication assessment from alignment file and genomic location of insertion sites.
Real-Time Nanopore Analysis Pipeline: Repository for developing a real-time Nanopore sequencing pipeline to enhance cancer vaccine research. Features include real-time monitoring, sequencing endpoints, and comparative TCR analysis between Singleron and Nanopore technologies.
Pipeline with GUI for nanopore-sequencing.
PathoPore - Longer Sequences and NextFlow Faster Analysis
😎 This repository contains scripts that I wrote for data analysis and visualization.
snakemake pipeline based on nanopolish
(long read) fastq input to final report
Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC
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