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leahkemp/README.md

Hello!

I'm a human (as far as I know, and as far as you know...). I like data and dancing. They haven't yet occurred simultaneously, but there is time yet 💅

The longer I code, the fewer strong opinions I have on what code should look like. But I do like good documentation and simplicity. I also think it can often be wise to be a lazy programmer. For example, producing code when there is a good reason to.

Pinned

  1. pipeface pipeface Public

    Nextflow pipeline to align, variant call (SNP's, indels's, SV's) and phase long read ONT and/or pacbio HiFi data

    Nextflow

  2. ESR-NZ/human_genomics_pipeline ESR-NZ/human_genomics_pipeline Public

    A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

    Python 29 21

  3. ont_human_workflow ont_human_workflow Public

    A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.

    Shell 2 1

  4. hyperparathyroid_analysis_20221102 hyperparathyroid_analysis_20221102 Public

    Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.

    Shell

  5. guinea_pore_c guinea_pore_c Public

    Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.

    HTML

  6. nesi/snakemake_workshop nesi/snakemake_workshop Public

    Snakemake workshop

    HTML 4 7