Toolkit and pipeline for processing short- and long-read RNA sequencing data.
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Updated
Sep 5, 2022 - Jupyter Notebook
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
antibiotic resistance profiling of nanopore reads
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Nextflow pipeline to assemble genomes from nanopore reads.
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Pipeline with GUI for nanopore-sequencing.
Benchmarking for long-reads assembler
😎 This repository contains scripts that I wrote for data analysis and visualization.
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
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