Comparative Genomics Toolkit 3
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Updated
Jun 7, 2024 - Python
Comparative Genomics Toolkit 3
A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
phylogenetics tools for linux (and other mostly posix compliant) computers
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
DFOIL: Introgression Testing for Five Taxa
Microbial Genome Circular plotting tool for comparative genomics using Circos
A tool for multiscale forward-time simulation of protein evolution.
Multisample Variant Format ToolKit
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Molecular Evolution Library for Python
phylogenetic analyses informed by deep mutational scanning data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Computational Biology & Bioinformatics Resources
MBEToolbox: Matlab toolbox for molecular evolution
A tool for plotting CAFE5 gene family expansion/contraction result
project that enables molecular design and computational screening of small molecules
Target-enrichment data processing in legumes
Janani Ravi's Research Group
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