microbiome
Here are 376 public repositories matching this topic...
Fantaxtic - Nested Bar Plots for Phyloseq Data
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Jun 6, 2024 - R
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
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Jun 6, 2024 - R
Bulk RNA-seq analysis of mourine organoids and in vivo CD8+ sorted single-cell RNA seq analysis
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Jun 6, 2024 - Jupyter Notebook
My personal website
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Jun 6, 2024 - HTML
Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
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Jun 6, 2024 - Python
Lightweight bioinformatics pipeline for microbial genome recovery
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Jun 6, 2024 - Python
Inference of microbial interaction networks from large-scale heterogeneous abundance data
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Jun 6, 2024 - Julia
National Microbiome Data Collaborative (NMDC) unified data model
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Jun 6, 2024 - Python
Orchestrating Microbiome Analysis
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Jun 7, 2024 - TeX
Testing differences in cell type proportions from single-cell data.
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Jun 7, 2024 - R
MicrobeRX
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Jun 5, 2024 - Python
This repository contains all project files, including scripts, results, and articles. It was developed for the UC project included in the bioinformatics master's program for 2023-2024.
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Jun 5, 2024 - R
A python package to calculate the dysbiosis score in microbiome datasets
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Jun 4, 2024 - Python
BioFlowML is a machine-learning toolbox implementing workflows for generating classification models and identification of biomarkers using microbiome data or clinical metadata.
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Jun 4, 2024 - Python
YaMAS is a package designed to easily download DNA datasets from the NCBI SRA website. It is developed by the YOLO lab team, and is designed to be simple, efficient, and easy to use for non-programmer users.
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Jun 3, 2024 - Python
Versatile open-source tool for microbiome analysis
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Jun 5, 2024 - C++
Repository for the data associated with my masters thesis
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Jun 3, 2024 - HTML
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