Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
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Updated
May 17, 2024
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
A GLUE project for Hepatitis C virus (HCV)
🦠📇 Compare prokaryotic genomic assemblies
Build a partitioned pangenome graph from microbial genomes
Run mlst on multiple samples with integrated quality control.
MiGA: Microbial Genomes Atlas
Nextflow Wrapper for TBProfiler
A GLUE project for comparative genomic analysis of parvoviruses
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Genomewide Epistasis Analysis on Bacteria
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
Automated upload of sequence data to IRIDA platform
Evaluating Nanopore-based bacterial variant calling
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
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