Super fast script for classifying metagenomic 16S/18S sequences
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Updated
Dec 7, 2017 - Perl
Super fast script for classifying metagenomic 16S/18S sequences
From Waste to Feed | Insect Biotech Research Group
Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
Data from ecological studies about how the climate change drives the microbial community dinamycs in aquatic ecosystems
EukRef PR2
Sup. Table 1 from Rodríguez-Gijón and Nuy et al., 2022 (Front. in Microbiology)
R scripts, metadata, input files & reference database
BM211 workshop materials
Pipepline for the standard quantification of microbial guilds from metagenomic samples.
A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
Interactive and evolving catalogue of microbial interactions based on the framework of Pacheco and Segrè (2019)
Microbial co-occurrence network reveals climate and geographic patterns for soil diversity on the planet
Supplemental code of the paper "Environmental selection shapes the formation of near-surface groundwater microbiomes".
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
Personal website
Suppressing bacteria in microbial communities with reinforcement learning
Agricultural practices in cropland, like soil tillage and fertilizer applications, profoundly alter soil physical and chemical properties over time.
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Groundwater bacterial communities evolve over time, exhibiting cyclic similarity patterns in response to multi-annual recharge events
A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using LinkML
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