This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.
-
Updated
Jan 6, 2023 - R
This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.
Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
Microbiome Study of Lupus Patients
A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
schema2jsonld is a tool for converting externally exposed metadata to schema.org, json-ld structured documents according to EDMI (EOSC Datasets Minimum Information) metadata guidelines
An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
Antibiotic Resistance Genes Finding
Repository for the Exam project of group 12 in the course "R for bio datascience".
Workflow for Metagenomics assembly with Long reads And Short reads to recover prokaryotic metagenomics-assembled genomes.
Scripts associated with the article "A genome catalogue of lake bacterial diversity and its drivers at continental scale"
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
MF1 Research and Innovation website
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Microbial co-occurrence network reveals climate and geographic patterns for soil diversity on the planet
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
Precise taxomomic classification system for metagenomic read mapping by using Apache Spark
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
Modified dada2 script, used for master's thesis project. Takes fast2 files and outputs ASV table, taxonomy table, phylogenetic tree, and input files for PICRUSt2
Add a description, image, and links to the metagenomics topic page so that developers can more easily learn about it.
To associate your repository with the metagenomics topic, visit your repo's landing page and select "manage topics."