Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
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Updated
May 24, 2024 - Parrot
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.
Precision HLA typing from next-generation sequencing data
📚 Tools and databases for analyzing HLA and VDJ genes.
CERTI is an Open Source HLA RTI. HLA (High-Level Architecture) is a general purpose architecture for distributed computer simulation systems. In HLA systems, the RTI (RunTime Infrastructure) manages data exchange between simulations. CERTI supports HLA 1.3 specifications (C++ and Java) and partial IEEE 1516-v2000 and IEEE 1516-v2010 (C++) . CERT…
Deep learning framework for proteomics
Kourami: Graph-guided assembly for HLA alleles
RACoN - RTI abstraction component for MS.NET (RACoN)
Python package for doing fast and accurate sequence annotation
A collection of modules to process and analyze IMGT-HLA sequences.
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
The repository contains all the code for the paper amino acid encoding using deep learning application
DL model to predict HLA peptide presentation
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