Here are
74 public repositories
matching this topic...
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
Evolutionary genomics of chromosomal inversions in Atlantic herring
Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
Updated
Jul 2, 2022
Python
CGPS implementation of Genotyphi for assembled genomes.
Updated
Nov 20, 2017
Java
Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
Updated
Oct 7, 2019
Python
haplotype estimation, custom panel creation, and genotype imputation
Updated
Sep 11, 2023
Nextflow
A command-line parser for VCF files designed for population genetics analyses.
Updated
Apr 14, 2023
Java
Analysis, annotation and prediction of SNPs related to prostate and breast cancer cell lines.
Updated
Sep 29, 2022
Jupyter Notebook
An abstraction layer between genotype and phenotype, with in-place mutation.
Updated
Jun 11, 2018
Rust
Scripts for improvement of genome reference sequenced based on anchoring approach (genotype patterns and sliding window approach)
Updated
Dec 10, 2020
Python
making punnett square on excel and calculating the phenotypic ratio.
Updated
Dec 4, 2023
Jupyter Notebook
Perl software to cluster SNPs based on its genotype.
Updated
Jul 18, 2019
Perl
Stefan's imputation accuracy package
Updated
Dec 14, 2017
HTML
Rhizosphere interactions under diverse canola genotypes: a key component in nitrogen use efficiency
Smarter database repository
Updated
May 29, 2024
Jupyter Notebook
Python tool for KIR3DS1/L1 genotyping
Updated
Nov 30, 2018
Python
Tokyo Symposium on Genomic Medicine (2024)
Updated
Apr 13, 2024
Jupyter Notebook
Tools for systematically evaluate and match genotype data
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