List of software/websites/databases/other stuff for genome engineering
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Updated
May 14, 2024
List of software/websites/databases/other stuff for genome engineering
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
FlashFry: The rapid CRISPR target site characterization tool
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
IES retention analysis from PacBio CCS reads
Meganucleases|ZFNs|TALENs|CRISPR-Cas|BaseEditors|PrimeEditor
A large scale off-target analysis tool for CRISPR/Cas9 genome editing system
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization
Benchmarking BleTIES with Tetrahymena long read data
Benchmarking BleTIES with simulated long reads
Source code and files for structural network analysis of Cas9 RNP
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