SPAdes Genome Assembler
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Updated
May 31, 2024 - C++
SPAdes Genome Assembler
Library-free horizontal transfer detection, with a focus on transposable element invasions
A program for assessing the T2T genome continuity
Pipeline for performing routine genome assembly
Repo containing all scripts associated with huhu nanopore data
Implementation of ToL genome assembly workflows
Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads
Simple bacterial assembly and annotation pipeline
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Reflexiv - a distributed genome assembler using Reflexible Distributed Kmer
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
This is a template for all assembly projects. Please read the instructions below on how to use it.
Scripts associated with kakī (*Himantopus novaezelandiae*) genome assembly using HiFi data
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
🌳 Human ancestry inference from genomic data
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
Scripts for Hill et al. (in review) 🌾
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
The genome of the contractile demosponge Tethya wilhelma
from protein alignments to deep learning preparatory.
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