A RMosek optimization interface for the Sybil package
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Updated
Jun 25, 2021 - R
A RMosek optimization interface for the Sybil package
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Flux Capacitor toolkit for systems biology
Source code and information for journal article Social dynamics and modeling of chrono-nutrition
A demo repository with example code for using the Systems Biology Simulation Core Library (SBSCL).
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.
Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.
Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.
Figure 5 - Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
iJV803: a genome-scale metabolic model for Methylomicrobium album BG8
A metabolic modeling workflow for communities of organisms in an nasal medium.
University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
Library to perform metabolic engineering tasks
Modeling the metabolic changes during the epithelial-to-mesenchymal transition.
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