a pacbiohifi read check for the quick view of the read types.
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Updated
May 12, 2024 - Shell
a pacbiohifi read check for the quick view of the read types.
OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
R functions and workflow for submitting amplicon sequence data to the ENA.
Parse and process FASTA and FASTQ formatted files of biological sequences.
Download fastqs or supplementary files from GEO and upload to hca-util bucket
A versatile compressor of third generation sequencing reads.
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
Obtain k-mer counts from fastx files
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
👷 Fasten toolkit, for streaming operations on fastq files
SYLENS: Sampling Yielding LEss Noticeable Samples
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Command line utility for manipulating Illumina-generated FASTQ files.
This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
fastq file compression program
A sorting method for encoding metagenomic data
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