contamination
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RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
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May 31, 2024 - C
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
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May 21, 2024 - mupad
Escape if you can! A radiological event has occurred and you have to find your way out. Pick up items along the way that may help or harm you. When you've accumulate too much radiation it's game over.
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May 17, 2024 - JavaScript
Tumour-in-Normal Contamination assessment with evolutionary theory.
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Apr 25, 2024 - R
Godot educational game about oceans.
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Apr 21, 2024 - GDScript
The LM Contamination Index is a manually created database of contamination evidences for LMs.
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Apr 11, 2024 - Python
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
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Apr 8, 2024 - Python
Remove human reads from a sequencing run
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Apr 8, 2024 - Rust
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
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Mar 27, 2024 - Python
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
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Feb 6, 2024 - Python
Analytical solutions for groundwater contaminant transport
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Dec 15, 2023 - Julia
🗑️🦷 decOM 🦷🗑️
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Nov 27, 2023 - Python
Shiny app for calculating & plotting data for UCL's and MK Trends
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Nov 25, 2023 - HTML
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
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Nov 6, 2023 - Perl
cross-contamination of plant virus base on read assignation
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Sep 14, 2023 - Python
Detecting contamination in NGS data and multi-species analysis
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Sep 11, 2023 - HTML
[IEEE ICASSP 2023] "Robust Subspace Tracking with Contamination Mitigation via Alpha-Divergence". In 48th IEEE International Conference on Acoustics, Speech, & Signal Processing, 2023.
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Jul 20, 2023 - MATLAB
Rapid and simple taxonomic profiling of genome and metagenome contigs
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Jun 13, 2023 - Python
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
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Mar 22, 2023 - R
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