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Issues list

EPI2ME decontam Oxford nanopore sequencing
#146 opened Apr 29, 2024 by CamillePhilippeSCI
2
Install issues
#145 opened Apr 21, 2024 by acrowell09
6
DNA concentrations for half of the samples are 0.1ng/ul before PCR. Can I do decontam?
#142 opened Feb 8, 2024 by sihanbu
2
Removal of contamination based on a negative control occurs when all of "P = NA"
#141 opened Jan 9, 2024 by 1023011930
16
Result vary as per sample size
#140 opened Nov 7, 2023 by achald7867
6
Selection of methods for different sample types and non-subjective strategy to select method and threshold
#139 opened Oct 31, 2023 by cBundg
2
a
#137 opened Sep 27, 2023 by cafferychen777
Problems with the decontamination of metagenomic data or viral data
#136 opened Sep 23, 2023 by 1023011930
6
Best way to use controls for multiple batches?
#135 opened Sep 19, 2023 by DrLCode
1
Is one negative control useless for this application?
#134 opened Jul 18, 2023 by lowrda
2
Here more NAs exist inside the calculated P-value and are classified as FALSE (non-contaminated features).
#133 opened Jul 8, 2023 by YMSen
3
How to use controls in multiple small batches over one experiment
#132 opened Jul 8, 2023 by AlexaBennett
2
very cross-contaminated samples
#131 opened Jul 3, 2023 by lauraDRH
6
isContaminant with batch option
#130 opened Jun 28, 2023 by Martinique-F
2
extraction control, pcr control and "buffer" control
#129 opened Jun 23, 2023 by doloacu
1
is "quant_reading" DNA concentration in some units or total DNA
#127 opened Apr 25, 2023 by Rob-murphys
5
Strange prevalence plot contamination in controls
#125 opened Mar 27, 2023 by ladywaspzhu
1
Positive control contamination
#123 opened Mar 10, 2023 by FarzanehRah
1
p.freq differs when using method="frequency" and method="auto/combined/minimum/either/both"
#122 opened Dec 8, 2022 by zz77zz
1
Very few contaminant detected regarding to the total number of ASVs
#121 opened Nov 30, 2022 by Mcouedel
1
When are assumptions for decontam violated?
#120 opened Nov 23, 2022 by pslai
1
Problems with "prune_taxa"
#118 opened Oct 31, 2022 by Englittrigfisk
1
"Biological ASVs" identified as contaminants / "Contaminant ASVs" not identified as contaminants
#117 opened Sep 30, 2022 by tellafiela
2
DNA concentration inputs
#116 opened Sep 21, 2022 by devinjones18
1
Importing the data
#115 opened Sep 1, 2022 by lynneitelson
7
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