A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
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Updated
May 31, 2024 - Jupyter Notebook
A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
Infectious Disease Sequencing Platform
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
An FPGA design for simulating biological neurons
UCSC Genome Browser source tree. Stable branch: "beta".
Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
Source code for Tabula Rasa lab website
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
Kuan-Hao Chao's Website
A comprehensive library for computational molecular biology
My github page
List of Computer Science courses with video lectures.
A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular Evolution (Yang 2006) and Molecular Evolution: A Statistical Approach (Yang 2014).
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
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