Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.
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May 21, 2024 - Python
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cell-mechanics
Here are 8 public repositories matching this topic...
GUI for AFM data analysis with an emphasis on biological specimens
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Mar 25, 2024 - Python
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
bioinformatics
structure
image-processing
cell
orientation
microscopy
fiber
imaging
biophysics
collagen
cell-mechanics
compaction
fibrosis
tissue-analysis
contractility
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Mar 23, 2024 - Python
Shape-Out has been superseded by Shape-Out 2.
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Jun 26, 2020 - Python
Bayesian Traction Force Microscopy
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Apr 28, 2024 - Jupyter Notebook
Analysis used in Damodaran et.al, Molecular Biology of the Cell , 2018
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Jul 19, 2020 - R
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Aug 31, 2023 - Python
Subroutines and functions written in MATLAB can predict stresses directly from phase images based on data trained from traction force and monolayer stress microscopy
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Feb 3, 2023 - MATLAB
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