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Supplementary scripts and files for the manuscript entitled 'Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”'
In these assignments, I worked with pandas, numpy, matplotlib, biopython libraries. There is also a local alignment algorithm for gene sequences. In each subfolder there is a task, how I solved it and a report, if it is required.
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.