Perform basic QC on illumina data

A pipeline to estimate the rate of purifying selection acting on stop codons of ortholog clusters from OrthoDB.(Based on https://github.com/cseoighe/StopEvol)

Small rna pipeline. Category:Multi-Sample

Perform basic QC on illumina data

Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection

Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.

END OF MASTER'S PROJECT: Valencian International University VIU

biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

Bioinformatics-pipeline in snakemake.

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

Concentration-Response Statistics

A snakemake pipeline for tick determination from ONT whole genome sequencing samples.

A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.

RNAseq pipeline for Pasini's lab written in snakemake

Novel mutations are identified in leukemia through variant analysis.

This is the anonymized version of unpublished clinical RNAseq dataset analysis, serving as a reference for custom RNAseq analysis pipeline

In this research project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.

cookbook for MetMiner

Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences