VIOS repository's docker deployment version. Refer to the result on DockerHub.

Variant calling of WGS datasets

Workflow for running PennCNV with Affymetrix platform files

A pipeline to estimate the rate of purifying selection acting on stop codons of ortholog clusters from OrthoDB.(Based on https://github.com/cseoighe/StopEvol)

Small rna pipeline. Category:Multi-Sample

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

Perform basic QC on illumina data

Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection

Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.

END OF MASTER'S PROJECT: Valencian International University VIU

Ralstonia eutropha BarSeq analysis

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

Concentration-Response Statistics

A snakemake pipeline for tick determination from ONT whole genome sequencing samples.

A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.

RNAseq pipeline for Pasini's lab written in snakemake

Novel mutations are identified in leukemia through variant analysis.