✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Updated
Oct 18, 2023 - Perl
✂️ ⚡ Rapid haploid variant calling and core genome alignment
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
💾 📃 "Reads to report" for public health and clinical microbiology
Pan-genome wide association studies
BSR-Based Allele Calling Algorithm
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
SEER, reimplemented in python 🐍🔮
Build a partitioned pangenome graph from microbial genomes
A scalable bacterial genome assembly, annotation and analysis pipeline
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
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