Release v1.4.0

kmtricks release v1.4.0

• Add
  • kmtricks combine: combine p/a and abundance matrices

Release v1.3.0

kmtricks release v1.3.0

• Add

  • kmtricks pipeline --repart-from: use the same partitioning scheme as another kmtricks run.
  • k-mer abundances indexing: cbf matrix construction.

• Fix

  • kmtricks filter --out-types k: some k-mers absent in the matrix were not reported.

Release v1.2.1

kmtricks release v1.2.1

• fix Bloom filters formatting on macOS.
• fix bugs related to empty partitions in hash mode.

Release v1.2.0

kmtricks release v1.2.0

• index

  • add support of findere

• k-mer matrix

  • new cmd: kmtricks filter
  • fix kmtricks dump/aggregate for presence/absence matrix

Release v1.1.1

kmtricks release v1.1.1

• fix histogram overhead
• fix query

Release v1.1.0

kmtricks release v1.1.0

• Rename cli options for consistency
• Outputs partition-specific false positive rate
• Plugins support

Release v1.0.0

kmtricks release v1.0.0

• New modules: dump, aggregate, index, query
• New API
• More time and space efficient, particularly in bf mode

Release v0.0.6

kmtricks v0.0.6

• kff support (https://github.com/Kmer-File-Format/kff-reference)
• socks-interface (https://gitlab.ub.uni-bielefeld.de/gi/socks)

Release v0.0.5

kmtricks v0.0.5

• fix k-mer size in ascii matrix

Release v0.0.4

kmtricks v0.0.4

• histogram
• automatic computation of min abundance thresholds