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28 Open 185 Closed
28 Open 185 Closed
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Issues list

Error while using ms.mixscape - ValueError: Input X contains NaN. bug Something isn't working
#617 opened May 28, 2024 by VittoriaDBocchi
@Zethson
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
Add diagnostic output for model.cond enhancement New feature or request
#612 opened May 27, 2024 by grst
@grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
Extend PyDESeq2 class to support arbitrary contrasts and designs enhancement New feature or request
#610 opened May 27, 2024 by grst
Distance Metrics Enhancement: New metrics, 3-way-comparisons, Bootstrapping enhancement New feature or request
#603 opened May 23, 2024 by eroell
8 tasks
@wxicu
How to plot the 0 value during different comparisons? enhancement New feature or request
#598 opened May 20, 2024 by mainharryHR
11
scCODA convergence issue for continous covairables bug Something isn't working
#597 opened May 16, 2024 by Marwansha
@johannesostner @wxicu
2
Expression prediction tutorial enhancement New feature or request
#587 opened May 2, 2024 by Zethson
1 of 3 tasks
@Zethson @Hrovatin @eroell
1
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
SCGEN lack of examples enhancement New feature or request
#577 opened Mar 30, 2024 by namsaraeva 2024
@Zethson
Add dataloader for sciplex-GxE enhancement New feature or request
#556 opened Mar 11, 2024 by Zethson
@namsaraeva
Add dataloader for Jiang et al enhancement New feature or request
#542 opened Feb 20, 2024 by Zethson
@namsaraeva
1
Get cleaner URLs for documentation enhancement New feature or request
#532 opened Feb 9, 2024 by Zethson
Bootstrap support for error estimation enhancement New feature or request
#497 opened Jan 11, 2024 by eroell 2024
@eroell
L1000 comparisons enhancement New feature or request
#495 opened Jan 9, 2024 by Zethson
Generalize de_res_to_anndata enhancement New feature or request
#491 opened Jan 6, 2024 by Zethson
3 tasks
Improve pytest speed enhancement New feature or request performance Performance
#430 opened Nov 9, 2023 by Zethson
1 of 5 tasks
@Lilly-May @wxicu
2
Streamlining Distance API enhancement New feature or request
#416 opened Oct 31, 2023 by Zethson
@yugeji @Zethson
@stefanpeidli @tessadgreen @mojtababahrami @Lilly-May
5
Improve GPU support for scgen enhancement New feature or request
#415 opened Oct 31, 2023 by Zethson
Consider merging a few multimodal datasets into Mudata objects enhancement New feature or request
#344 opened Aug 17, 2023 by Zethson
@Zethson
1
Conda package enhancement New feature or request
#294 opened Jun 20, 2023 by Nusob888
@wxicu
5
Better support for DE in scverse enhancement New feature or request
#189 opened Jan 13, 2023 by Zethson
@grst @Zethson
16
ProTip! Exclude everything labeled bug with -label:bug.