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  1. McSwan McSwan Public

    Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.

    HTML 1 2

  2. foldSFS-cpp foldSFS-cpp Public

    Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.

    C

  3. itara itara Public

    Repository of various functions and scripts.

    Python

  4. vanaprabhava vanaprabhava Public

    Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.

    R

  5. Probabilistic-Neanderthal-admixture-dating Probabilistic-Neanderthal-admixture-dating Public

    Method for estimating the age of admixture using a single diploid sample and genotype likelihoods.

    Python 2 1

  6. ASCEND ASCEND Public

    Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

    Python 8 1