Skip to content

Sequencing adapters and contaminants collected from different tools for easy download

Notifications You must be signed in to change notification settings

sschmeier/seq_adapters_contaminants

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

seq_adapters_contaminants

Sequencing adapters and contaminants collection from different tools for easy download.

Tools

One combined file

Read all fasta adapter files. Make a file with unique sequences. Id will be the first occurrence.

For some tools the order of the sequences in the adapter file matter(e.g. bbduk), thus here we keep the order as first seen first in union.

python union.py bbmap/xxx/adapters.fa atropos/xxx/sequencing_adapters.fa fastqc/xxx/contaminant_list.fa > adapters_union.fa

About

Sequencing adapters and contaminants collected from different tools for easy download

Topics

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages