GitHub - spisakt/BWAS_comment: Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""

Replicable Multivariate BWAS with moderate sample sizes

Tamas Spisak, Ulrike Bingel, Tor Wager, Nature, 2022

Option 1: contact the authors for credentials and get it with get_data.ipynb in one minute (this option is for collaborators only).
Option 2: Get the data manually from ConnectomeDB. See hcp_data/readme.md for details.

Run the analyses with 1 click (in the cloud)
Set up everything to run in 5 mins (locally on your computer)
- install docker
- run docker run -it -p 8080:8080 -p 8888:8888 tspisak/bwas:latest jupyter notebook
- copy paste the last link in your browser.

Main analysis notebooks:

Extended analysis: replicability of 52 phenotypes:

Plotting results:

Supplementary analysis notebooks:

Data: HCP1200 release Data source: ConnectomeDB. See hcp_data/readme.md

T. Spisak, U. Bingel, T. Wager, Multivariate BWAS can be replicable with moderate sample sizes in some cases, accepted in Nature

Name		Name	Last commit message	Last commit date
Latest commit History 245 Commits
.devcontainer		.devcontainer
.github/workflows		.github/workflows
docs		docs
fig		fig
hcp_data		hcp_data
res		res
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
animated_plots.ipynb		animated_plots.ipynb
get_data.ipynb		get_data.ipynb
multivariate_BWAS_replicability_analysis_CT.ipynb		multivariate_BWAS_replicability_analysis_CT.ipynb
multivariate_BWAS_replicability_analysis_FC.ipynb		multivariate_BWAS_replicability_analysis_FC.ipynb
multivariate_BWAS_replicability_analysis_FC_extensive.ipynb		multivariate_BWAS_replicability_analysis_FC_extensive.ipynb
multivariate_BWAS_replicability_analysis_FC_extensive_motion.ipynb		multivariate_BWAS_replicability_analysis_FC_extensive_motion.ipynb
multivariate_BWAS_replicability_analysis_FC_hires.ipynb		multivariate_BWAS_replicability_analysis_FC_hires.ipynb
multivariate_BWAS_replicability_analysis_FC_motion.ipynb		multivariate_BWAS_replicability_analysis_FC_motion.ipynb
plot_results_CT.ipynb		plot_results_CT.ipynb
plot_results_FC.ipynb		plot_results_FC.ipynb
requirements.txt		requirements.txt
sim_effect_size.ipynb		sim_effect_size.ipynb