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Scripts to process dMRI volumes and create cortical streamlines in rat data.

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servindc/ratcortex-dwi-streams

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ratcortex-dwi-streams

Code to process dMRI volumes and create cortical streamlines in rat data. ℹ️ Info & details

Setup

  1. Install the MINC tools required for the code:

    sudo apt install minc-tools
  2. Create a conda environment:

    conda env create --file environment.yml
  3. Activate the environment:

    conda activate cx-streams-env
  4. Display script help:

    nii2streams.sh -h

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Scripts to process dMRI volumes and create cortical streamlines in rat data.

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