Designate 0.22.0 release

doc/source/_static/docversions.js

@@ -1,4 +1,4 @@
-var versions = ['dev', '0.21.x', '0.20.x', '0.19.x', '0.18.x', '0.17.x', '0.16.x', '0.15.x', '0.14.x', '0.13.x', '0.12.x', '0.11.x', '0.10.x', '0.9.x', '0.8.0', '0.7.0', '0.6', '0.5', '0.4', '0.3'];
+var versions = ['dev', '0.22.x', '0.21.x', '0.20.x', '0.19.x', '0.18.x', '0.17.x', '0.16.x', '0.15.x', '0.14.x', '0.13.x', '0.12.x', '0.11.x', '0.10.x', '0.9.x', '0.8.0', '0.7.0', '0.6', '0.5', '0.4', '0.3'];
 
 function insert_version_links() {
     for (i = 0; i < versions.length; i++){

doc/source/_static/version_switcher.json

@@ -5,11 +5,17 @@
         "url": "https://scikit-image.org/docs/dev/"
     },
     {
-        "name": "0.21 (stable)",
-        "version":"0.21.0",
+        "name": "0.22 (stable)",
+        "version":"0.22.0",
         "url": "https://scikit-image.org/docs/stable/",
         "preferred": true
     },
+    {
+        "name": "0.21",
+        "version":"0.21.0",
+        "url": "https://scikit-image.org/docs/0.21.x//",
+        "preferred": true
+    },
     {
         "name": "0.20",
         "version":"0.20.0",

doc/source/release_notes/release_0.22.rst

@@ -0,0 +1,195 @@
+scikit-image 0.22.0
+===================
+
+We're happy to announce the release of scikit-image 0.22.0!
+
+Highlights
+----------
+
+- Add new image sequence ``skimage.data.palisades_of_vogt`` showing in-vivo tissue of the palisades of Vogt (`#6858 <https://github.com/scikit-image/scikit-image/pull/6858>`_).
+- Add inpainting example to gallery (`#6853 <https://github.com/scikit-image/scikit-image/pull/6853>`_).
+
+New Features
+------------
+
+- Add new image sequence ``skimage.data.palisades_of_vogt`` showing in-vivo tissue of the palisades of Vogt (`#6858 <https://github.com/scikit-image/scikit-image/pull/6858>`_).
+
+API Changes
+-----------
+
+- Update minimal required NumPy version to 1.22 (`#7005 <https://github.com/scikit-image/scikit-image/pull/7005>`_).
+- Update minimal required lazy_loader version to 0.3 (`#7043 <https://github.com/scikit-image/scikit-image/pull/7043>`_).
+- Make PyWavelets an optional dependency which is only required for ``skimage.restoration.denoise_wavelet`` and ``skimage.restoration.estimate_sigma`` (`#7156 <https://github.com/scikit-image/scikit-image/pull/7156>`_).
+- Remove deprecated ``skimage.filters.inverse``. Use ``skimage.filters.filter_inverse`` instead (`#7161 <https://github.com/scikit-image/scikit-image/pull/7161>`_).
+- Remove deprecated function ``skimage.filters.ridges.compute_hessian_eigenvalues``.  Use ``skimage.feature.hessian_matrix_eigvals`` on the results of  ``skimage.feature.hessian_matrix`` instead (`#7162 <https://github.com/scikit-image/scikit-image/pull/7162>`_).
+- Remove deprecated automatic detection of the color channel in  ``skimage.filters.gaussian``. ``channel_axis=None`` now indicates a grayscale image. Set the color channel with ``channel_axis=-1`` explicitly (`#7164 <https://github.com/scikit-image/scikit-image/pull/7164>`_).
+- Change number of returned arguments in ``skimage.registration.phase_cross_correlation``. The function now always returns the 3 arguments ``shift``, ``error``, and ``phasediff`` (`#7166 <https://github.com/scikit-image/scikit-image/pull/7166>`_).
+- Deprecate ``return_error`` in ``skimage.registration.phase_cross_correlation`` (`#7174 <https://github.com/scikit-image/scikit-image/pull/7174>`_).
+
+Performance
+-----------
+
+- Add lazy loading to the ``skimage.feature`` submodule (`#6983 <https://github.com/scikit-image/scikit-image/pull/6983>`_).
+- Add lazy loading to the ``skimage.graph`` submodule (`#6985 <https://github.com/scikit-image/scikit-image/pull/6985>`_).
+- Add lazy loading to the ``skimage.measure`` submodule (`#6999 <https://github.com/scikit-image/scikit-image/pull/6999>`_).
+- Add lazy loading to the ``skimage.transform`` submodule (`#7009 <https://github.com/scikit-image/scikit-image/pull/7009>`_).
+- Add lazy loading to the ``skimage.restoration`` submodule (`#7021 <https://github.com/scikit-image/scikit-image/pull/7021>`_).
+- Add lazy loading to the ``skimage.registration`` submodule (`#7032 <https://github.com/scikit-image/scikit-image/pull/7032>`_).
+- Avoid unnecessary padding in ``skimage.measure.block_resize`` (`#7092 <https://github.com/scikit-image/scikit-image/pull/7092>`_).
+
+Bug Fixes
+---------
+
+- Add missing properties ``num_pixels`` and ``coords_scaled`` to  ``skimage.measure.regionprops_table`` (`#7039 <https://github.com/scikit-image/scikit-image/pull/7039>`_).
+- Fix ``too many values to unpack error`` with imageio 2.31.1 in ``video.rst`` (`#7076 <https://github.com/scikit-image/scikit-image/pull/7076>`_).
+- Address error in ``skimage.filters.threshold_triangle`` when images with a uniform intensity are passed. In these cases the uniform intensity is returned as the threshold (`#7098 <https://github.com/scikit-image/scikit-image/pull/7098>`_).
+- Fix error in ``skimage.color.lab2rgb`` for 1D input (`#7116 <https://github.com/scikit-image/scikit-image/pull/7116>`_).
+- Make ``skimage.registration.phase_cross_correlation`` consistently return an array even if ``disambiguate=True`` (`#7112 <https://github.com/scikit-image/scikit-image/pull/7112>`_).
+- Allow ``extra_properties`` of non-equal lengths to be passed correctly to  ``skimage.measure.regionprops_table`` (`#7136 <https://github.com/scikit-image/scikit-image/pull/7136>`_).
+
+Documentation
+-------------
+
+- Use a more descriptive title for current inpainting example (`#6989 <https://github.com/scikit-image/scikit-image/pull/6989>`_).
+- Fix URLs to the install page (`#6998 <https://github.com/scikit-image/scikit-image/pull/6998>`_).
+- Fix equation for Wiener filter in ``restoration.wiener``'s docstring (`#6987 <https://github.com/scikit-image/scikit-image/pull/6987>`_).
+- Fix missing links in INSTALL.rst and simplify language (`#6984 <https://github.com/scikit-image/scikit-image/pull/6984>`_).
+- Edit installation and contributor guidelines (`#6991 <https://github.com/scikit-image/scikit-image/pull/6991>`_).
+- Fix URLs that lead to 404 page (`#7008 <https://github.com/scikit-image/scikit-image/pull/7008>`_).
+- Replace with correct reference to eigenvalues in ridge detection docstrings (`#7034 <https://github.com/scikit-image/scikit-image/pull/7034>`_).
+- Add inpainting example to gallery (`#6853 <https://github.com/scikit-image/scikit-image/pull/6853>`_).
+- Fix grammar in SKIP 1 (`#7081 <https://github.com/scikit-image/scikit-image/pull/7081>`_).
+- Add missing minus in ``SimilarityTransform`` docstring (`#6840 <https://github.com/scikit-image/scikit-image/pull/6840>`_).
+- Add one-line docstring to ``skimage.segmentation`` (`#6843 <https://github.com/scikit-image/scikit-image/pull/6843>`_).
+- Add a short docstring to ``skimage.util`` (`#6831 <https://github.com/scikit-image/scikit-image/pull/6831>`_).
+- Enable version warning banners for docs (`#7139 <https://github.com/scikit-image/scikit-image/pull/7139>`_).
+- Clarify order of dimensions in ``skimage.transform.EuclideanTransform`` (`#7103 <https://github.com/scikit-image/scikit-image/pull/7103>`_).
+- Add docstring to the ``morphology`` module (`#6814 <https://github.com/scikit-image/scikit-image/pull/6814>`_).
+- Include Plausible analytics from Scientific Python in our HTML docs (`#7145 <https://github.com/scikit-image/scikit-image/pull/7145>`_).
+- Specify coordinate convention in ``skimage.draw.polygon2mask`` (`#7131 <https://github.com/scikit-image/scikit-image/pull/7131>`_).
+- Update 0.22.0 release notes (`#7182 <https://github.com/scikit-image/scikit-image/pull/7182>`_).
+
+Infrastructure
+--------------
+
+- Pin milestone labeler to v0.1.0 SHA (`#6982 <https://github.com/scikit-image/scikit-image/pull/6982>`_).
+- Ensure existing target directory for ``random.js`` (`#7015 <https://github.com/scikit-image/scikit-image/pull/7015>`_).
+- Assign next milestone only for PRs targeting ``main`` branch (`#7018 <https://github.com/scikit-image/scikit-image/pull/7018>`_).
+- Add missing directories to ``spin docs --clean`` command (`#7019 <https://github.com/scikit-image/scikit-image/pull/7019>`_).
+- Rework ``generate_release_notes.py`` and add PR summary parsing (`#6961 <https://github.com/scikit-image/scikit-image/pull/6961>`_).
+- Use packaged version of ``generate_release_notes.py`` (``changelist``) (`#7049 <https://github.com/scikit-image/scikit-image/pull/7049>`_).
+- Generate requirements files from pyproject.toml (`#7085 <https://github.com/scikit-image/scikit-image/pull/7085>`_).
+- Update spin to v0.5 (`#7093 <https://github.com/scikit-image/scikit-image/pull/7093>`_).
+- Update to LLVM 16 with choco temporarily (`#7109 <https://github.com/scikit-image/scikit-image/pull/7109>`_).
+- Update pytest config in ``pyproject.toml`` with repo-review recommendations (`#7063 <https://github.com/scikit-image/scikit-image/pull/7063>`_).
+- Use checkout action version 4 (`#7180 <https://github.com/scikit-image/scikit-image/pull/7180>`_).
+
+Maintenance
+-----------
+
+- Don't test numpy prerelease on azure (`#6996 <https://github.com/scikit-image/scikit-image/pull/6996>`_).
+- Drop Python 3.8 support per SPEC 0 (`#6990 <https://github.com/scikit-image/scikit-image/pull/6990>`_).
+- Upper pin imageio (`#7002 <https://github.com/scikit-image/scikit-image/pull/7002>`_).
+- meson: allow proper selection of NumPy, Pythran in cross builds (`#7003 <https://github.com/scikit-image/scikit-image/pull/7003>`_).
+- Unpin imageio and add warningfilter (`#7006 <https://github.com/scikit-image/scikit-image/pull/7006>`_).
+- Update to latest attach-next-milestone action (`#7014 <https://github.com/scikit-image/scikit-image/pull/7014>`_).
+- Avoid deprecated auto-removal of overlapping axes in thresholding example (`#7026 <https://github.com/scikit-image/scikit-image/pull/7026>`_).
+- Remove conflicting setuptools upper pin (`#7045 <https://github.com/scikit-image/scikit-image/pull/7045>`_).
+- Remove future.graph after v0.21 release (`#6899 <https://github.com/scikit-image/scikit-image/pull/6899>`_).
+- Cleanup from move to pyproject.toml (`#7044 <https://github.com/scikit-image/scikit-image/pull/7044>`_).
+- Ignore new matplotlib warning (`#7056 <https://github.com/scikit-image/scikit-image/pull/7056>`_).
+- Update spin (`#7054 <https://github.com/scikit-image/scikit-image/pull/7054>`_).
+- Ignore SciPy 1.12.dev0 deprecation warning (`#7057 <https://github.com/scikit-image/scikit-image/pull/7057>`_).
+- Include expected warning for SciPy 1.12 (`#7058 <https://github.com/scikit-image/scikit-image/pull/7058>`_).
+- Mark NaN-related deprecation warning from ``np.clip`` as optional in tests (`#7052 <https://github.com/scikit-image/scikit-image/pull/7052>`_).
+- Fix abs value function warnings (`#7010 <https://github.com/scikit-image/scikit-image/pull/7010>`_).
+- Temporary fix for wheel recipe (`#7059 <https://github.com/scikit-image/scikit-image/pull/7059>`_).
+- Temporary fix for wheel building (`#7060 <https://github.com/scikit-image/scikit-image/pull/7060>`_).
+- Remove outdated comment (`#7077 <https://github.com/scikit-image/scikit-image/pull/7077>`_).
+- Include py.typed file in distribution (PEP 561) (`#7073 <https://github.com/scikit-image/scikit-image/pull/7073>`_).
+- Transition user guide to ``import skimage as ski`` (`#7024 <https://github.com/scikit-image/scikit-image/pull/7024>`_).
+- Fix for NumPy 1.25 (`#6970 <https://github.com/scikit-image/scikit-image/pull/6970>`_).
+- Pin sphinx until sphinx-gallery is fixed (`#7100 <https://github.com/scikit-image/scikit-image/pull/7100>`_).
+- Cleanup old Python 3.11 tests (`#7099 <https://github.com/scikit-image/scikit-image/pull/7099>`_).
+- Revert "Pin sphinx until sphinx-gallery is fixed (#7100)" (`#7102 <https://github.com/scikit-image/scikit-image/pull/7102>`_).
+- MNT: Remove ``np.float_`` alias; it is removed in NumPy 2.0 (`#7118 <https://github.com/scikit-image/scikit-image/pull/7118>`_).
+- Fix for NumPy 1.26 (`#7101 <https://github.com/scikit-image/scikit-image/pull/7101>`_).
+- Update meson-python (`#7120 <https://github.com/scikit-image/scikit-image/pull/7120>`_).
+- We now require sklearn 1.1, as per [SPEC0](https://scientific-python.org/specs/spec-0000/) (`#7121 <https://github.com/scikit-image/scikit-image/pull/7121>`_).
+- Update for NumPy 2 namespace cleanup (`#7119 <https://github.com/scikit-image/scikit-image/pull/7119>`_).
+- DOC: minor numpydoc syntax update (`#7123 <https://github.com/scikit-image/scikit-image/pull/7123>`_).
+- Update for NumPy 2 namespace cleanup (`#7122 <https://github.com/scikit-image/scikit-image/pull/7122>`_).
+- Temporary work-around for NEP 51 numpy scalar reprs + doctests (`#7125 <https://github.com/scikit-image/scikit-image/pull/7125>`_).
+- Update lazy loader (`#7126 <https://github.com/scikit-image/scikit-image/pull/7126>`_).
+- Fix PEP 8 issues (`#7142 <https://github.com/scikit-image/scikit-image/pull/7142>`_).
+- Remove single-threaded dask usage in face detection gallery example which fixes issues with running the example on Windows and CI (`#7141 <https://github.com/scikit-image/scikit-image/pull/7141>`_).
+- Update spin version to 0.6 (`#7150 <https://github.com/scikit-image/scikit-image/pull/7150>`_).
+- Match pep8speaks and ruff line lengths to 88 (`#7148 <https://github.com/scikit-image/scikit-image/pull/7148>`_).
+- Remove last reference to distutils in ``_build_utils/tempita.py`` (`#7137 <https://github.com/scikit-image/scikit-image/pull/7137>`_).
+- Update sphinx, sphinx-gallery & sphinx_design (`#7155 <https://github.com/scikit-image/scikit-image/pull/7155>`_).
+- Update minimal version of numpydoc to 1.6 (`#7106 <https://github.com/scikit-image/scikit-image/pull/7106>`_).
+- Build wheels for py3.12 (`#7082 <https://github.com/scikit-image/scikit-image/pull/7082>`_).
+- Update label and milestone workflows (`#7163 <https://github.com/scikit-image/scikit-image/pull/7163>`_).
+- Update TODO (see #6899) (`#7165 <https://github.com/scikit-image/scikit-image/pull/7165>`_).
+- Announce Python 3.12 support (`#7167 <https://github.com/scikit-image/scikit-image/pull/7167>`_).
+- Remove pep8speaks config (`#7172 <https://github.com/scikit-image/scikit-image/pull/7172>`_).
+- Filter out expected runtime warnings in registation.phase_cross_correlation when disambiguate=True (`#7147 <https://github.com/scikit-image/scikit-image/pull/7147>`_).
+- Use pre-commit bot (`#7171 <https://github.com/scikit-image/scikit-image/pull/7171>`_).
+- Fix missing warnings import in ``phase_cross_correlation`` (`#7175 <https://github.com/scikit-image/scikit-image/pull/7175>`_).
+- Fix release notes error (`#7177 <https://github.com/scikit-image/scikit-image/pull/7177>`_).
+- Use trusted publisher (`#7178 <https://github.com/scikit-image/scikit-image/pull/7178>`_).
+
+Contributors
+------------
+
+24 authors added to this release (alphabetically):
+
+- `@akonsk <https://github.com/akonsk>`_
+- `@patquem <https://github.com/patquem>`_
+- `@rraadd88 <https://github.com/rraadd88>`_
+- `@scott-vsi <https://github.com/scott-vsi>`_
+- Adeyemi Biola  (`@decorouz <https://github.com/decorouz>`_)
+- Amund Vedal (`@vedal <https://github.com/vedal>`_)
+- Ananya Srivastava (`@ana42742 <https://github.com/ana42742>`_)
+- Andrew J. Hesford (`@ahesford <https://github.com/ahesford>`_)
+- Antony Lee (`@anntzer <https://github.com/anntzer>`_)
+- Elena Pascal (`@elena-pascal <https://github.com/elena-pascal>`_)
+- Jarrod Millman (`@jarrodmillman <https://github.com/jarrodmillman>`_)
+- Juan Nunez-Iglesias (`@jni <https://github.com/jni>`_)
+- Kenfack Anafack Alex Bruno (`@Br-Al <https://github.com/Br-Al>`_)
+- Klaus Rettinghaus (`@rettinghaus <https://github.com/rettinghaus>`_)
+- Larry Bradley (`@larrybradley <https://github.com/larrybradley>`_)
+- Lars Grüter (`@lagru <https://github.com/lagru>`_)
+- Marianne Corvellec (`@mkcor <https://github.com/mkcor>`_)
+- Marvin Albert (`@m-albert <https://github.com/m-albert>`_)
+- Matthias Bussonnier (`@Carreau <https://github.com/Carreau>`_)
+- Matthias Nwt (`@matthiasnwt <https://github.com/matthiasnwt>`_)
+- Mike Taves (`@mwtoews <https://github.com/mwtoews>`_)
+- Riadh Fezzani (`@rfezzani <https://github.com/rfezzani>`_)
+- Stefan van der Walt (`@stefanv <https://github.com/stefanv>`_)
+- Talley Lambert (`@tlambert03 <https://github.com/tlambert03>`_)
+
+19 reviewers added to this release (alphabetically):
+
+- `@akonsk <https://github.com/akonsk>`_
+- `@scott-vsi <https://github.com/scott-vsi>`_
+- Adeyemi Biola  (`@decorouz <https://github.com/decorouz>`_)
+- Ananya Srivastava (`@ana42742 <https://github.com/ana42742>`_)
+- Andrew J. Hesford (`@ahesford <https://github.com/ahesford>`_)
+- Egor Panfilov (`@soupault <https://github.com/soupault>`_)
+- Grzegorz Bokota (`@Czaki <https://github.com/Czaki>`_)
+- Jarrod Millman (`@jarrodmillman <https://github.com/jarrodmillman>`_)
+- Juan Nunez-Iglesias (`@jni <https://github.com/jni>`_)
+- Kristen Thyng (`@kthyng <https://github.com/kthyng>`_)
+- Larry Bradley (`@larrybradley <https://github.com/larrybradley>`_)
+- Lars Grüter (`@lagru <https://github.com/lagru>`_)
+- Marianne Corvellec (`@mkcor <https://github.com/mkcor>`_)
+- Mark Harfouche (`@hmaarrfk <https://github.com/hmaarrfk>`_)
+- Marvin Albert (`@m-albert <https://github.com/m-albert>`_)
+- Matthias Bussonnier (`@Carreau <https://github.com/Carreau>`_)
+- Maxim (`@koshakOK <https://github.com/koshakOK>`_)
+- Mike Taves (`@mwtoews <https://github.com/mwtoews>`_)
+- Stefan van der Walt (`@stefanv <https://github.com/stefanv>`_)
+
+*These lists are automatically generated, and may not be complete or may contain
+duplicates.*