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Add multiple descriptor-based fingerprints from RDKit #85

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merged 38 commits into from
Mar 20, 2024
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@j-adamczyk j-adamczyk commented Mar 16, 2024

Adds:

  • autocorrelation
  • MORSE
  • RDF
  • WHIM
  • 3D pharmacophore

Also contains 3D conformer generation required for those.

I had problems with BCUT and GETAWAY, described in issues on RDKit Github:

# Conflicts:
#	skfp/fingerprints/__init__.py
#	skfp/fingerprints/base.py
#	skfp/fingerprints/maccs.py
#	skfp/fingerprints/map4.py
#	skfp/fingerprints/mhfp.py
#	skfp/fingerprints/pharmacophore.py
#	skfp/fingerprints/secfp.py
#	skfp/preprocessing.py
#	tests/conftest.py
#	tests/fingerprints/map4.py
#	tests/fingerprints/mhfp.py
skfp/preprocessing.py Outdated Show resolved Hide resolved
@my-alaska my-alaska merged commit d51d7ed into master Mar 20, 2024
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@my-alaska my-alaska deleted the descriptors branch March 20, 2024 09:18
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2 participants