Skip to content

Issues: satijalab/seurat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

483 Open 7,095 Closed
483 Open 7,095 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

spatstat.explore is not loaded bug Something isn't working
#8948 opened May 28, 2024 by fangpingmu
Integration Introduction vignette issue bug Something isn't working
#8947 opened May 28, 2024 by FrancoCaTo
Problem with RunPCA when specify features = VariableFeatures(obj) bug Something isn't working
#8946 opened May 28, 2024 by bellenger-l
5
GitHub wiki out of date documentation Error in documentation
#8945 opened May 28, 2024 by kevinrue
Error in .subscript.2ary(x, i, , drop = TRUE) : subscript out of bounds when running FindIntegrationAnchors #1712 bug Something isn't working
#8944 opened May 28, 2024 by sropri92
visium hd support bug Something isn't working
#8943 opened May 28, 2024 by raygozag
1
How to use data from an article as reference
#8942 opened May 27, 2024 by sghoshuc
Warning message: No columnames present in cell embeddings, setting to 'integratedccafull_1:50'
#8941 opened May 27, 2024 by Sirin24
Featureplot blend issue
#8940 opened May 27, 2024 by tanonymush
Error about weight.reduction in TransferData
#8939 opened May 27, 2024 by Mollyx06
1
Warning: Layer counts isn't present in the assay object; returning NULL
#8938 opened May 27, 2024 by jianguotao
GSE dataset to Seurat object convert problem
#8937 opened May 27, 2024 by focusdk88
Fail to replicate results in "Mapping and annotating query datasets" bug Something isn't working
#8936 opened May 26, 2024 by yuming14
1
Error in validObject(.Object) : invalid class "ScaledMatrix" object: the supplied seed must support extract_array() bug Something isn't working
#8935 opened May 26, 2024 by Flu09
remotes::install_github("satijalab/seurat-data", quiet = TRUE) does not work bug Something isn't working
#8933 opened May 25, 2024 by asmlgkj
2
RCTD for Xenium data
#8932 opened May 25, 2024 by balthasar0810
Visium image shrunk
#8931 opened May 24, 2024 by weishwu
2
Warning: Adding a dimensional reduction (integrated.rpca) without the associated assay being present
#8927 opened May 23, 2024 by Flu09
MapQuery for CITE-seq, using a CITE-seq reference
#8925 opened May 23, 2024 by Zarkorix
DoHeatmap donot return plot bug Something isn't working
#8924 opened May 23, 2024 by nhu-github
1
Error in running IntegrateData()
#8923 opened May 23, 2024 by JieWu2012
Integrating multiple objects with IntegrateEmbeddings() erases all previous reductions bug Something isn't working
#8917 opened May 21, 2024 by hannanw
Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length
#8916 opened May 21, 2024 by Noralii
2
SCTransform in a merged and subsetted object how to set variable features
#8915 opened May 21, 2024 by Starlord3796
Combining counts of 2 genes into 1 gene - spatial
#8914 opened May 20, 2024 by LukeJ89
ProTip! Add no:assignee to see everything that’s not assigned.