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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

Popular repositories

  1. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 35 10

  2. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 14 4

  3. read5 read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 8 1

  4. magnipore magnipore Public

    Magnipore: Differential single nucleotide changes of ONT signals

    Red 5

  5. vegeta vegeta Public

    work in progress

    Python 4 2

  6. pcago-unified pcago-unified Public

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read c…

    R 1 4

Repositories

Showing 10 of 16 repositories
  • sugar Public
    Python 0 0 0 0 Updated Jun 7, 2024
  • pcago-unified Public

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

    R 1 4 1 0 Updated May 31, 2024
  • pcago Public

    Interactive web service that allows analysis of RNA-Seq read count data with PCA and clustering.

    R 0 GPL-3.0 0 5 0 Updated May 31, 2024
  • pcago-electron Public

    Runs PCAGO as standalone desktop application using the Electron framework.

    JavaScript 0 GPL-3.0 0 0 0 Updated May 31, 2024
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 14 GPL-3.0 4 7 0 Updated May 14, 2024
  • RNAswarm Public

    RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

    Python 1 MIT 1 1 0 Updated Apr 30, 2024
  • anchorna Public
    Python 0 0 0 0 Updated Apr 12, 2024
  • read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 8 GPL-3.0 1 1 0 Updated Mar 21, 2024
  • Nanopore_Seq_Metaanalysis Public
    HTML 1 0 0 0 Updated Mar 7, 2024
  • read5_ont Public

    Wrapper to read fast5 and pod5 files.

    Python 0 GPL-3.0 0 0 0 Updated Mar 6, 2024
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