Popular repositories

1. metabolome-lipidome-MSDIAL metabolome-lipidome-MSDIAL Public

   Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

   R 12 5

2. microbiome-shotgun microbiome-shotgun Public

   Pipeline for shotgun metagenomics analyses using Sunbeam wrapper scripts and extensions.

   R 3 1

3. transcriptome-QiaSeq transcriptome-QiaSeq Public

   Pipeline for scRNAseq (or low input RNAseq) sequences analyses.

   2

4. microbiome-dada2 microbiome-dada2 Public

   DADA2 pipeline for sequence variant identification of targeted amplicons sequencing.

   1 1

5. VariantCall-OVarFlow VariantCall-OVarFlow Public

   1

6. scRNA_with_STARsolo scRNA_with_STARsolo Public

   Processing DB Rhapsody scRNA data with STARsolo

   1 1