Tbb 240411

[rsbivand]

#2372 fixed test for tbb;

checklist

1 OK,

2 agree with comment, only macOS has dSYMs, but there is detritus.

3 compile and link tested, and execution of minimal program tested if compiling and linking succeeds

4 added --enable-tbb=no or equivalently --disable-tbb, and run pkg-config and all subsequent tests conditional on the user not disabling TBB; by default enabled,

5 see comments in that commit.

[kbenoit]

Thanks @rsbivand. But:

This works except when tbb is not present, in which case on macOS, it errors for me. During build:

ℹ Loading quanteda
Error in dyn.load(dll_copy_file) : 
  unable to load shared object '/var/folders/rc/y2gv0_dn0z19ygq271w7f9dr0000gp/T//RtmpGI5emZ/pkgload11f916b2ec668/quanteda.so':
  dlopen(/var/folders/rc/y2gv0_dn0z19ygq271w7f9dr0000gp/T//RtmpGI5emZ/pkgload11f916b2ec668/quanteda.so, 0x0006): symbol not found in flat namespace '__ZN3tbb6detail2r110deallocateERNS0_2d117small_object_poolEPvmRKNS2_14execution_dataE'
Calls: suppressPackageStartupMessages ... <Anonymous> -> load_dll -> library.dynam2 -> dyn.load
Execution halted

Exited with status 1.

[kbenoit]

Also, in configure.ac, should this not prevent the dSYM detritus?

CXXFLAGS=`"${R_HOME}/bin/R" CMD config CXXFLAGS`
CXXFLAGS="${CXXFLAGS} -g0"  # Disable debug information

[rsbivand]

Please report all of the install output, or run from the command line R CMD build --no-build-vignettes quanteda then R CMD check ... on the built tarball. This should give an 00install.out, which you can attach here (change the extension to .txt or create a zip archive if bulky). It is possible that tbb is not completely absent.

[kbenoit]

00install.out below. Actually, that worked. This is after running

(base) KB-MacBook-Pro-14:quanteda kbenoit$ brew uninstall tbb
Uninstalling /opt/homebrew/Cellar/tbb/2021.12.0... (177 files, 2.7MB)

* installing *source* package ‘quanteda’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... yes
checking for clang++ -arch arm64 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++17 -E
checking for gcc... clang -arch arm64
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to enable C11 features... none needed
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... (cached) yes
checking for clang++ -arch arm64 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking Intel TBB existence:... no
configure: WARNING: Intel TBB not installed; install TBB devel package for parallel processing or update PKG_CONFIG_PATH environment variable
configure: Package CPP flags: 
configure: Package LIBS: 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c fcm.cpp -o fcm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c index.cpp -o index.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c kwic.cpp -o kwic.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c pattern2fixed.cpp -o pattern2fixed.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c serialize.cpp -o serialize.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_chunk.cpp -o tokens_chunk.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_combine.cpp -o tokens_combine.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_compound.cpp -o tokens_compound.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_group.cpp -o tokens_group.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_lookup.cpp -o tokens_lookup.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_ngrams.cpp -o tokens_ngrams.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_replace.cpp -o tokens_replace.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_restore.cpp -o tokens_restore.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_segment.cpp -o tokens_segment.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_select.cpp -o tokens_select.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c tokens_xptr.cpp -o tokens_xptr.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include   -I../inst/include  -fPIC  -falign-functions=64 -Wall -g -O2  -c utility.cpp -o utility.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o quanteda.so RcppExports.o fcm.o index.o kwic.o pattern2fixed.o serialize.o tokens_chunk.o tokens_combine.o tokens_compound.o tokens_group.o tokens_lookup.o tokens_ngrams.o tokens_replace.o tokens_restore.o tokens_segment.o tokens_select.o tokens_xptr.o utility.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/kbenoit/Dropbox (Personal)/GitHub/quanteda/quanteda.Rcheck/00LOCK-quanteda/00new/quanteda/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (quanteda)

However, when I try to build it in RStudio, I get this:

==> Rcpp::compileAttributes()

* Updated R/RcppExports.R

==> devtools::document(roclets = c('rd', 'collate', 'namespace', 'vignette'))

ℹ Updating quanteda documentation
ℹ Loading quanteda
Error in dyn.load(dll_copy_file) : 
  unable to load shared object '/var/folders/rc/y2gv0_dn0z19ygq271w7f9dr0000gp/T//RtmpmoqMcr/pkgload1746b7efb9970/quanteda.so':
  dlopen(/var/folders/rc/y2gv0_dn0z19ygq271w7f9dr0000gp/T//RtmpmoqMcr/pkgload1746b7efb9970/quanteda.so, 0x0006): Library not loaded: /opt/homebrew/opt/tbb/lib/libtbb.12.dylib
  Referenced from: <5D963323-43F1-3C99-AB61-26E33B24E3CC> /private/var/folders/rc/y2gv0_dn0z19ygq271w7f9dr0000gp/T/RtmpmoqMcr/pkgload1746b7efb9970/quanteda.so
  Reason: tried: '/opt/homebrew/opt/tbb/lib/libtbb.12.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/tbb/lib/libtbb.12.dylib' (no such file), '/opt/homebrew/opt/tbb/lib/libtbb.12.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libtbb.12.dylib' (no such file), '/Library/Java/JavaVirtualMachines/jdk-11.0.18+10/Contents/Home/lib/server/libtbb.12.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libtbb.12.dylib' (no such file), '/Library/Java/JavaVirtualMach
Calls: suppressPackageStartupMessages ... <Anonymous> -> load_dll -> library.dynam2 -> dyn.load
Execution halted

Exited with status 1.

[kbenoit]

Thanks @rsbivand