Release 0.8.0 (#489)

* Release 0.8.0

doc/developers/releases.rst

@@ -17,17 +17,7 @@ Before the Release
 Uploading the Release to PyPI
 -----------------------------
 
-pulse2percept wheels are built using Azure Pipelines to support the following:
-
-- Python 3.5 - 3.7
-- Linux: manylinux1, manylinux2010 for i686 and x86_64
-- macOS: OS X 10.6 and up
-- Windows: Server 2016 with VS 2017 for win-32 and amd64 (closes issue #88)
-
-Wheels are built using the `cibuildwheel`_ package. Once their `PR194`_ is merged,
-we can start automating the PyPI upload whenever a tag is pushed using GitHub Actions.
-
-Until then, the artifacts need to be downloaded from Azure Pipelines.
+pulse2percept wheels are built using GitHub Actions.
 
 .. important::
 
@@ -74,7 +64,7 @@ Releasing the code on GitHub
    branch should be a release.
 
 *  Draft a new release on PR and tag it with "vX.Y".
-   Upload all the wheels you downloaded as artifacts from Azure Pipelines
+   Upload all the wheels you downloaded as artifacts from GitHub Actions
    above.
 
 After the release

doc/users/release_notes.rst

@@ -4,26 +4,54 @@
 Release Notes
 =============
 
-.. important::
-
-    **pulse2percept 0.6 was the last version to support Python <= 3.5.**
-    pulse2percept 0.7+ requires Python 3.6+.
-
-v0.8.0 (2021, planned)
-----------------------
+v0.8.0 (2022-05-05)
+-------------------
 
 Highlights
 ~~~~~~~~~~
 
+*  New implants: :py:class:`~pulse2percept.implants.BVT44` [Petoe2021]_
+   (:pull:`465`)
+*  New models: :py:class:`~pulse2percept.models.BiphasicAxonMapModel`
+   [Granley2021]_ (:pull:`398`) and
+   :py:class:`~pulse2percept.models.Thompson2003Model` [Thompson2003]_
+   (:pull:`448`)
+*  New datasets: :py:func:`~pulse2percept.datasets.load_greenwald2009`
+   [Greenwald2009]_ (:pull:`459`) and
+   :py:func:`~pulse2percept.datasets.load_perezfornos2012`
+   [PerezFornos2012]_ (:pull:`457`)
+*  New stimuli: :py:class:`~pulse2percept.stimuli.BarStimulus`,
+   :py:class:`~pulse2percept.stimuli.GratingStimulus` (:pull:`310`)
+*  Python 3.10 support (:pull:`479`)
+
 New features
 ~~~~~~~~~~~~
 
+*  New gallery examples for visual field maps (:pull:`432`), Nanduri
+   dataset (:pull:`452`), psychophysics stimuli (:pull:`480`), and
+   :py:class:`~pulse2percept.models.BiphasicAxonMapModel` (:pull:`484`)
+*  Crop method for :py:class:`~pulse2percept.stimuli.ImageStimulus` and 
+   :py:class:`~pulse2percept.stimuli.VideoStimulus` objects (:pull:`455`)
+*  Specify number of OpenMP threads (:pull:`453`)
+*  Ignore stimuli of deactivated electrodes (:pull:`444`)
+*  Percepts can now have a limited number of gray levels (:pull:`443`)
+*  Automatic stimulus reshaping for 
+   :py:class:`~pulse2percept.stimuli.ImageStimulus` and 
+   :py:class:`~pulse2percept.stimuli.VideoStimulus` objects (:pull:`434`)
+*  :py:class:`~pulse2percept.implants.ElectrodeGrid` can now have different
+   spacings in x and y direction (:pull:`430`)
+*  Add new plotting styles for a grid's ``plot`` method (:pull:`426`, 
+   :pull:`433`, :pull:`446`)
+*  Additional options for :py:func:`~pulse2percept.viz.scatter_correlation`
+   (:pull:`422`)
+
 API changes
 ~~~~~~~~~~~
 
 Backward-incompatible changes
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
+*  ``RetinalCoordTransform`` has been renamed to ``VisualFieldMap`` (:pull:`432`)
 *  ``plot_axon_map`` was removed: Use :py:meth:`pulse2percept.models.AxonMapModel.plot`
 *  ``plot_implant_on_axon_map`` was removed: Use
    :py:meth:`pulse2percept.implants.ProsthesisSystem.plot` on top of
@@ -32,9 +60,20 @@ Backward-incompatible changes
 Deprecations
 ^^^^^^^^^^^^
 
+None.
+
 Bug fixes
 ~~~~~~~~~
 
+*  Fix handling of multi-channel images for scikit-image >= 0.19 (:pull:`473`)
+*  Fix corrupted stimuli when created from multiple stimuli (:pull:`469`)
+*  :py:func:`~pulse2percept.viz.plot_argus_phosphenes` now works for sliced subsets of data
+   (:pull:`415`)
+*  Fix plot window for the :py:class:`~pulse2percept.models.AxonMapModel` ``plot`` method
+   (:pull:`414`)
+*  Keep metadata intact when stimuli are created from other stimuli (:pull:`396`)
+*  Be able to run :py:class:`~pulse2percept.models.AxonMapModel` on a single pixel (:pull:`395`)
+*  Mirror-flip the :py:class:`~pulse2percept.implants.BVT24` implant (:pull:`393`)
 
 v0.7.1 (2021-06-21)
 -------------------

pulse2percept/percepts/tests/test_base.py

@@ -1,16 +1,17 @@
+from pulse2percept.utils import Grid2D
+from pulse2percept.percepts import Percept
+from skimage.io import imread
+from skimage import img_as_float
+from imageio import mimread
+from matplotlib.animation import FuncAnimation
+from matplotlib.axes import Subplot
+import matplotlib.pyplot as plt
 import os
 import numpy as np
 import pytest
 import numpy.testing as npt
-import matplotlib.pyplot as plt
-from matplotlib.axes import Subplot
-from matplotlib.animation import FuncAnimation
-from imageio import mimread
-from skimage import img_as_float
-from skimage.io import imread
-
-from pulse2percept.percepts import Percept
-from pulse2percept.utils import Grid2D
+import matplotlib
+matplotlib.use('Agg')
 
 
 def test_Percept():

pulse2percept/stimuli/tests/test_videos.py

@@ -1,12 +1,13 @@
+from pulse2percept.stimuli import VideoStimulus, BostonTrain
+from skimage.io import imsave
+from matplotlib.animation import FuncAnimation
 import os
 import numpy as np
 import numpy.testing as npt
 import pytest
 from imageio import mimwrite
-from matplotlib.animation import FuncAnimation
-from skimage.io import imsave
-
-from pulse2percept.stimuli import VideoStimulus, BostonTrain
+import matplotlib
+matplotlib.use('Agg')
 
 
 def test_VideoStimulus():

pulse2percept/version.py

@@ -1 +1 @@
-__version__ = '0.8.0.dev0'
+__version__ = '0.8.0'

pulse2percept/viz/tests/test_argus.py

@@ -1,13 +1,14 @@
+from pulse2percept.viz import (plot_argus_phosphenes,
+                               plot_argus_simulated_phosphenes)
+from pulse2percept.implants import ArgusI, ArgusII, AlphaAMS
+from pulse2percept.models import AxonMapModel, ScoreboardModel
+import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd
 import numpy.testing as npt
 import pytest
-import matplotlib.pyplot as plt
-
-from pulse2percept.models import AxonMapModel, ScoreboardModel
-from pulse2percept.implants import ArgusI, ArgusII, AlphaAMS
-from pulse2percept.viz import (plot_argus_phosphenes,
-                               plot_argus_simulated_phosphenes)
+import matplotlib
+matplotlib.use('Agg')
 
 
 def test_plot_argus_phosphenes():

pulse2percept/viz/tests/test_base.py

@@ -1,10 +1,11 @@
+from pulse2percept.viz import scatter_correlation, correlation_matrix
+import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd
 import pytest
 import numpy.testing as npt
-import matplotlib.pyplot as plt
-
-from pulse2percept.viz import scatter_correlation, correlation_matrix
+import matplotlib
+matplotlib.use('Agg')
 
 
 def test_scatter_correlation():