A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker
CONTIGuator is no longer actively maintained (except for small bugfixes and requests)! Contiguator's authors strongly suggest to use Medusa instead
Supported tags and respective Dockerfile links
2.7.5,latest(Dockerfile)
For more information about this image and its history, please see the relevant manifest file. This image is updated via pull requests to the contiguator GitHub repo.
CONTIGuator is a bacterial genomes finishing tool for structural insights on draft genomes. CONTIGuator is developed by Florence computational biology group.
For CONTIGuator run through the command line interface (CLI) allowing the deployment on Cloud, Cluster and docker Swamp.
By default the path is /data, to import and export the result of your analyse you need to link the folder we your data are to the docker /data folder by user -v <USERFOLDER>:/data.
$ docker run -it --rm -v /export:/data pseudogene/contiguator:latest \
python /usr/local/bin/CONTIGuator.py -c "/data/contig.fasta" -r "/data/reference.fasta" -o "/data/output"
git clone https://github.com/pseudogene/contiguators.git
cd contiguator
docker build --rm=true -t contiguator:latest -t contiguator:2.7.5 .
cd ..
Please see the Docker installation documentation for details on how to upgrade your Docker daemon.
Be sure to familiarise yourself with the repository's README.md file before attempting a pull request.
If you have any problems with or questions about this docker image, please contact us through a GitHub issue. Any issue related to CONTIGuator itself must be done directly with CONTIGuator developers or via the CONTIGuator-user mailing list.
You are invited to contribute new features, fixes, or updates, large or small; we are always thrilled to receive pull requests, and do our best to process them as fast as we can.
Before you start to code, we recommend discussing your plans through a GitHub issue, especially for more ambitious contributions. This gives other contributors a chance to point you in the right direction, give you feedback on your design, and help you find out if someone else is working on the same thing.