Popular repositories

1. thesis-2023-travelling-waves thesis-2023-travelling-waves Public

   A thesis project conducted in 2022/2023 at the Computational Systems Neuroscience Group (CSNG) of Charles University's Faculty of Mathematics and Physics. The project aims to study relationships be…

   Jupyter Notebook 1

2. colocalization-analysis colocalization-analysis Public

   This is a function created for biological analysis of colocalizing signals in microscopy.

   Python

3. chromatin-volume-analysis chromatin-volume-analysis Public

   The project aims to perform semantic segmentation of chromatin subtypes in nuclei, discriminating chromocenters, perinuclear, perinucleolar, and nucleoplasmatic chromatin. The result is to be used …

   Python

4. blobs-counts blobs-counts Public

   Script calculate the amount of sperm cells present in one sample. It can be used for analysis of dead and live ratios for sperm cells. Data are supposed to come from spinning disk microscope.

   Jupyter Notebook

5. NMAI059-2022 NMAI059-2022 Public

   Forked from zhlavka/NMAI059-2022

   Jupyter Notebook

6. viral_particles_distribution_in_nucleus viral_particles_distribution_in_nucleus Public

   In this project the goal is to measure distance of all protein particles from lamin signal, show if there can be any possible interaction between these particles and lamin.

   Jupyter Notebook