Temporal Phenotyping (TPheno)

Introduction

Prototype modules for temporal phenotying based on the EHR-sequencing pipeline.

Please refer to this short summary paper EHR Sequencing for Disease Subtyping for more details

seqmaker: primary module

to be continued ...

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
batchpheno		batchpheno
bin		bin
classifier		classifier
cluster		cluster
cohort_selection		cohort_selection
config		config
demo		demo
diabetes		diabetes
doc		doc
ontology		ontology
pattern		pattern
pyumls		pyumls
qrymed/doc		qrymed/doc
ref		ref
sampler		sampler
seqmaker		seqmaker
sprint		sprint
system		system
README.md		README.md
__init__.py		__init__.py
backup.py		backup.py
dbmi_poster-tpheno-v1.pdf		dbmi_poster-tpheno-v1.pdf
versions.py		versions.py