Fixed a bug that C.ar was converted to C3 when reading mol2 files #183
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name: lint_python | |
on: [pull_request, push] | |
jobs: | |
lint_python: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- run: pip install --upgrade pip wheel | |
- run: pip install --upgrade setuptools | |
- run: pip install bandit black codespell flake8 flake8-bugbear | |
flake8-comprehensions isort mypy pytest pyupgrade safety | |
- run: bandit --recursive --skip B101,B314,B404,B405,B602,B603,B607 . | |
- run: black --check . || true | |
- run: codespell --ignore-words-list="anumber,ba,nd,ser,te,tring" || true # --skip="*.css,*.js,*.lock" | |
- run: flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
- run: flake8 . --count --exit-zero --max-complexity=10 --max-line-length=88 | |
--show-source --statistics | |
- run: isort --check-only --profile black . || true | |
- run: pip install -r requirements.txt || pip install --editable . || true | |
- run: mkdir --parents --verbose .mypy_cache | |
- run: mypy --ignore-missing-imports --install-types --non-interactive . || true | |
- run: pytest . || true | |
- run: pytest --doctest-modules . || true | |
- run: shopt -s globstar && pyupgrade --py36-plus **/*.py || true | |
- run: safety check |