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Illustrate solutions to avoid local minima in multistate capture-recapture models

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oliviergimenez/multistate_local_minima

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Local minima and multistate capture-recapture models

This repository contains R code to illustrate solutions to avoid local minima in multistate capture-recapture models. I use Mark, Jags, Admb and Stan to illustrate the issue. This work is largely inspired by Chapter 9 of the Gentle Introduction to Mark by E. Cooch & G. White.

In details, you will find:

  • multistate_local_minimav2.pdf: a few slides to present the issue
  • multistate_local_minima.R: illustration with simulated data
  • locmin_cr.Rmd, locmin_cr.docx, locmin_cr.html: illustration with real data

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