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Issues list

Consider creating all Uberon system level phenotype classes manually for uPheno
#949 opened May 30, 2024 by matentzn
@ar-ibrahim
Ensure that all TOP level HPO and MP terms have corresponding uPheno classes
#948 opened May 30, 2024 by matentzn
@ar-ibrahim
5
Investigate why "uPheno:circulatory system phenotype" and "uPheno: integumental system phenotype" do not exist..
#947 opened May 30, 2024 by matentzn
@rays22
2
CHEBI IDs used by HPO and other phenotype ontologies do not match those used by GO, RHEA, UniProt
#946 opened May 27, 2024 by cmungall
2
Some plural labels do not work
#943 opened Apr 24, 2024 by matentzn
1
Documentation: Dead link to OLS
#942 opened Apr 9, 2024 by hansenp
1
RPPR stats OBA
#935 opened Mar 28, 2024 by matentzn
Create a uPheno release product for data analysis
#932 opened Mar 7, 2024 by matentzn
2
Request new pattern for Incomplete structure
#931 opened Feb 22, 2024 by LCCarmody
4
Failure importing http://purl.obolibrary.org/obo/upheno/upheno_root_alignments.owl
#929 opened Feb 5, 2024 by haideriqbal
@jamesamcl
4
Map APO entities to OBA / GO (or whatever else)
#928 opened Jan 30, 2024 by matentzn
@rays22
5
Map APO modifiers to PATO
#927 opened Jan 30, 2024 by matentzn
@rays22
10
test cases to compare characteristic of vs characterisitc of part of
#925 opened Dec 15, 2023 by sbello
1 of 4 tasks
@sbello @rays22 @ar-ibrahim
2
Use case discussion for paper / + outreach group
#922 opened Sep 4, 2023 by matentzn
@rays22
upheno.owl cannot be parsed with Pronto
#919 opened Jun 20, 2023 by Zethson
4
Versionized download links
#918 opened Jun 20, 2023 by Zethson
@jamesamcl
1
Documentation request: comparators in phenotype definitions documentation
#917 opened Jun 19, 2023 by matentzn
@rays22
Documentation request: "Normal" phenotypes documentation
#916 opened Jun 19, 2023 by matentzn
@rays22
Dealing with GO obsoletion cell death help wanted pattern urgent
#912 opened May 18, 2023 by sbello
Create a basic Upheno toolkit for bioinformaticians
#909 opened Mar 17, 2023 by matentzn
create a pattern for biological attribute severity
#906 opened Mar 2, 2023 by Daniel-Olson
2
create a pattern for adding anatomy subclass axioms pattern
#904 opened Feb 27, 2023 by sbello
1
@rays22
1
Create a proper APO integration
#903 opened Feb 16, 2023 by matentzn
4 tasks
@matentzn @rays22
update the pattern matches
#902 opened Feb 2, 2023 by sbello
@matentzn
1
Investigate cases where the uPheno2 semantic similarity score is lower than the uPheno1 score pattern
#900 opened Dec 1, 2022 by rays22
@rays22
1
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